Selected Publications

  1. Xia X, Zhang S, Su Y, Sun Z* MICAlign: a sequence-to-structure alignment tool integrating multiple sources of information in conditional random fields. Bioinformatics. 2009 Jun 1;25(11):1433-4.
  2. Sun Z*,Luo J,Zhou Y,Luo J,Liu K and Li W. Exploring phenotype -associated modules in an oral cavity tumor using an integrated framework. Bioinformatics. 2009 Jan 29. 25(6):795-800.
  3. Wang J*, Huang B, Xia X, Sun Z*.， Funneled landscape leads to robustness of cell networks: yeast cell cycle. PLoS Comput Biol. 2006 Nov 17;2(11):e147.
  4. Li Li, Yingwu Huang, Xuefeng Xia, Zhirong Sun*, Preferential Duplication in the Sparse Part of Yeast Protein Interaction Network. Mol. Biol. Evol. 2006. 23(12):2467-73
  5. Hu Chen, Ni Huang and Zhirong Sun*, SubLoc: A Server/Client Suite for Protein Subcellular Location based on SOAP. Bioinformatics. 2006 Feb 1;22(3):376-7.
  6. Chen Hu, Xue Y, Huang N, Yao Xb* and Sun ZR*. MeMo: A web tool for prediction of protein methylation modifications. 2006. Nucleic Acids Research. 2006 Jul 1;34:W249-53.
  7. Zhou Y, Wang R, Li L, Xia XF & Sun ZR* Inferring functional linkages between proteins from evolutionary scenarios 2006. J .Mol. Biology. 359(4):1150-9
  8. Zi Z, Cho KH, Sung MH, Xia X, Zheng J, Sun Z.R*., In silico identification of the key components and steps in IFN-gamma induced JAK-STAT signaling pathway. FEBS Letter. 2005 Feb 14;579(5):1101-8.
  9. Ji XL, Y Y, Li L, Li YD & Sun ZR*， HMMGEP: clustering gene expression data using hidden Markov models. Bioinformatics. 2004. Feb 26
  10. Zheng JS, Wu JJ, and Sun ZR* An Approach to Identify Over-represented Cis-elements in Related Sequences. Nucleic Acids Research. 2003, V31, N7, 1-11
  11. Hua SJ, Guo T, Gough J & Sun ZR*. (2002). Proteins with Class Alpha/Beta Fold Have High-level Participation in Fusion Events. J. Mol. Biology, 320:713-719
  12. Hua SJ & Sun ZR*. (2001). Support Vector Machine Approach for Protein Subcellular Localization Prediction. Bioinformatics.17:721-728.
  13. Hua SJ & Sun ZR*. (2001). A Novel Method of Protein Secondary Structure Prediction with High Segment Overlap Measure: Support Vector Machine Approach. J. Mol .Biol. 308:397-407.